Cell signaling


In biology, cell signaling (cell signalling in British English) or cell communication is the ability of a cell to receive, process, and transmit signals with its environment and with itself.[1][2][3] Cell signaling is a fundamental property of all cellular life in prokaryotes and eukaryotes.[4] Signals that originate from outside a cell (or extracellular signals) can be physical agents like mechanical pressure, voltage, temperature, light, or chemical signals (e.g., small molecules, peptides, or gas). Cell signaling can occur over short or long distances, and as a result can be classified as autocrine, juxtacrine, intracrine, paracrine, or endocrine. Signaling molecules can be synthesized from various biosynthetic pathways and released through passive or active transports, or even from cell damage.

Receptors play a key role in cell signaling as they are able to detect chemical signals or physical stimuli. Receptors are generally proteins located on the cell surface or within the interior of the cell such as the cytoplasm, organelles, and nucleus. Cell surface receptors usually bind with extracellular signals (or ligands), which causes a conformational change in the receptor that leads it to initiate enzymic activity, or to open or close ion channel activity. Some receptors do not contain enzymatic or channel-like domains but are instead linked to enzymes or transporters. Other receptors like nuclear receptors have a different mechanism such as changing their DNA binding properties and cellular localization to the nucleus.

Signal transduction begins with the transformation (or transduction) of a signal into a chemical one, which can directly activate an ion channel (ligand-gated ion channel) or initiate a second messenger system cascade that propagates the signal through the cell. Second messenger systems can amplify a signal, in which activation of a few receptors results in multiple secondary messengers being activated, thereby amplifying the initial signal (the first messenger). The downstream effects of these signaling pathways may include additional enzymatic activities such as proteolytic cleavage, phosphorylation, methylation, and ubiquitinylation.

Each cell is programmed to respond to specific extracellular signal molecules,[5] and is the basis of development, tissue repair, immunity, and homeostasis. Errors in signaling interactions may cause diseases such as cancer, autoimmunity, and diabetes.[6][7][8][9]

In many small organisms such as bacteria, quorum sensing enables individuals to begin an activity only when the population is sufficiently large. This signaling between cells was first observed in the marine bacterium Aliivibrio fischeri, which produces light when the population is dense enough.[10] The mechanism involves the production and detection of a signaling molecule, and the regulation of gene transcription in response. Quorum sensing operates in both gram-positive and gram-negative bacteria, and both within and between species.[11]

In slime moulds, individual cells known as amoebae aggregate together to form fruiting bodies and eventually spores, under the influence of a chemical signal, originally named acrasin. The individuals move by chemotaxis, i.e. they are attracted by the chemical gradient. Some species use cyclic AMP as the signal; others such as Polysphondylium violaceum use other molecules, in its case N-propionyl-gamma-L-glutamyl-L-ornithine-delta-lactam ethyl ester, nicknamed glorin.[12]


Different types of extracellular signaling
Differences between autocrine and paracrine signaling
Transmembrane receptor working principle
The AMPA receptor bound to a glutamate antagonist showing the amino terminal, ligand binding, and transmembrane domain, PDB 3KG2
A G Protein-coupled receptor within the plasma membrane.
VEGF receptors are a type of enzyme-coupled receptors, specifically tyrosine kinase receptors
Key components of a signal transduction pathway (MAPK/ERK pathway shown)
Signal transduction pathways that lead to a cellular response
Notch-mediated juxtacrine signal between adjacent cells.
Carbonfixation
Photo-respiration
Pentosephosphatepathway
Citricacid cycle
Glyoxylatecycle
Ureacycle
Fattyacidsynthesis
Fattyacidelongation
Betaoxidation
Peroxisomal
betaoxidation


Glyco-genolysis
Glyco-genesis
Glyco-lysis
Gluconeo-genesis
Pyruvatedecarb-oxylation
Fermentation
Keto-lysis
Keto-genesis
feeders togluconeo-genesis
Direct / C4 / CAMcarbon intake
Light reaction
Oxidativephosphorylation
Amino aciddeamination
Citrateshuttle
Lipogenesis
Lipolysis
Steroidogenesis
MVA pathway
MEP pathway
Shikimatepathway
Transcription &
replication
Translation
Proteolysis
Glycosyl-ation


Sugaracids
Double/multiplesugars & glycans
Simplesugars
Inositol-P
Amino sugars
& sialic acids
Nucleotide sugars
Hexose-P
Triose-P
Glycerol
P-glycerates
Pentose-P
Tetrose-P
Propionyl-CoA
Succinate
Acetyl-CoA
Pentose-P
P-glycerates
Glyoxylate
Photosystems
Pyruvate
Lactate
Acetyl-CoA
Citrate
Oxalo-acetate
Malate
Succinyl-CoA
α-Keto-glutarate
Ketonebodies
Respiratorychain
Serine group
Alanine
Branched-chainamino acids
Aspartategroup
Homoserinegroup
& lysine
Glutamategroup
& proline
Arginine
Creatine
& polyamines
Ketogenic &
glucogenicamino acids
Amino acids
Shikimate
Aromatic aminoacids & histidine
Ascorbate
(vitamin C)
δ-ALA
Bilepigments
Hemes
Cobalamins (vitamin B12)
Variousvitamin Bs
Calciferols
(vitamin D)
Retinoids
(vitamin A)
Quinones (vitamin K)
& tocopherols (vitamin E)
Cofactors
Vitamins
& minerals
Antioxidants
PRPP
Nucleotides
Nucleicacids
Proteins
Glycoproteins
& proteoglycans
Chlorophylls
MEP
MVA
Acetyl-CoA
Polyketides
Terpenoidbackbones
Terpenoids
& carotenoids (vitamin A)
Cholesterol
Bile acids
Glycero-phospholipids
Glycerolipids
Acyl-CoA
Fattyacids
Glyco-sphingolipids
Sphingolipids
Waxes
Polyunsaturatedfatty acids
Neurotransmitters
& thyroid hormones
Steroids
Endo-cannabinoids
Eicosanoids